Hard disk IO errors during boot

These errors show up every time the computer boots.

I tried latest kernel and also older versions like 4.14. I also have kernel params “libata.force=noncq”.
How to fix that?

That isn’t a good sign, I only had those issues when my drive or cables were actually defective. When I suspected software issues in the past it turned out that changing hardware fixed the issue after all.

I would try running smartctl -a /dev/$device (replace $drive with the name of the affected device) from the smartmontools package and look for issues in the bottom section of that output. You can post it here and I can take a look.

Also you should do a backup of your data asap if you don’t have one already, if the issue gets worse.

As it is a laptop I either expect it to be a drive issue, a broken connector of the drive or the slot where the drive sits, or some issue on the notebook mainbook. If you have access to another notebook drive and your notebook drive can be easily changed I would try copying your system to that drive and boot from there.

If there are issues during copying your data you might want to have a look at the ddrescue package. One tip: use a mapfile and don’t place it on the drive you are recovering. :stuck_out_tongue:

Here’s the output of smartctl

After the errors I’ve replaced with a brand new disk. I suspected the cable, too so I tried another one but the errors remain.

Yeah, SMART tells you the same story, that errors happend during communication. The SMART Attributes seem to be OK, and the selftests ran fine. So I wouldn’t suspect the disc, esp. as you tried another one. :confused:

If you can see the mainboard, does it look corroded around the hard disk connector or do you see bend pins? That would be the only thing I can think of that would be relatively easy to diagnose.

To exclude a software issue, I would try installing another distro, but I can’t imagine that would make a difference, as NixOS uses the normal Linux kernel with a sensible configuration.

I hope you can find the issue!

Weird… My new NixOS install has the same issue, with a totally new WD-RED 1TB disk.

smartctl 7.0 2018-12-30 r4883 [x86_64-linux-4.19.36] (local build)
Copyright (C) 2002-18, Bruce Allen, Christian Franke, www.smartmontools.org

Model Family:     Western Digital Red
Device Model:     WDC WD10EFRX-68FYTN0
Serial Number:    WD-WCC4J5VJVZF0
LU WWN Device Id: 5 0014ee 264fea8a0
Firmware Version: 82.00A82
User Capacity:    1,000,204,886,016 bytes [1.00 TB]
Sector Sizes:     512 bytes logical, 4096 bytes physical
Rotation Rate:    5400 rpm
Device is:        In smartctl database [for details use: -P show]
ATA Version is:   ACS-2 (minor revision not indicated)
SATA Version is:  SATA 3.0, 6.0 Gb/s (current: 1.5 Gb/s)
Local Time is:    Tue Apr 30 15:40:41 2019 CEST
SMART support is: Available - device has SMART capability.
SMART support is: Enabled

SMART overall-health self-assessment test result: PASSED

General SMART Values:
Offline data collection status:  (0x00) Offline data collection activity
                                        was never started.
                                        Auto Offline Data Collection: Disabled.
Self-test execution status:      (   0) The previous self-test routine completed
                                        without error or no self-test has ever
                                        been run.
Total time to complete Offline
data collection:                (13020) seconds.
Offline data collection
capabilities:                    (0x7b) SMART execute Offline immediate.
                                        Auto Offline data collection on/off support.
                                        Suspend Offline collection upon new
                                        Offline surface scan supported.
                                        Self-test supported.
                                        Conveyance Self-test supported.
                                        Selective Self-test supported.
SMART capabilities:            (0x0003) Saves SMART data before entering
                                        power-saving mode.
                                        Supports SMART auto save timer.
Error logging capability:        (0x01) Error logging supported.
                                        General Purpose Logging supported.
Short self-test routine
recommended polling time:        (   2) minutes.
Extended self-test routine
recommended polling time:        ( 148) minutes.
Conveyance self-test routine
recommended polling time:        (   5) minutes.
SCT capabilities:              (0x303d) SCT Status supported.
                                        SCT Error Recovery Control supported.
                                        SCT Feature Control supported.
                                        SCT Data Table supported.

SMART Attributes Data Structure revision number: 16
Vendor Specific SMART Attributes with Thresholds:
  1 Raw_Read_Error_Rate     0x002f   200   200   051    Pre-fail  Always       -       0
  3 Spin_Up_Time            0x0027   141   139   021    Pre-fail  Always       -       3908
  4 Start_Stop_Count        0x0032   100   100   000    Old_age   Always       -       9
  5 Reallocated_Sector_Ct   0x0033   200   200   140    Pre-fail  Always       -       0
  7 Seek_Error_Rate         0x002e   100   253   000    Old_age   Always       -       0
  9 Power_On_Hours          0x0032   100   100   000    Old_age   Always       -       77
 10 Spin_Retry_Count        0x0032   100   253   000    Old_age   Always       -       0
 11 Calibration_Retry_Count 0x0032   100   253   000    Old_age   Always       -       0
 12 Power_Cycle_Count       0x0032   100   100   000    Old_age   Always       -       9
192 Power-Off_Retract_Count 0x0032   200   200   000    Old_age   Always       -       6
193 Load_Cycle_Count        0x0032   200   200   000    Old_age   Always       -       182
194 Temperature_Celsius     0x0022   110   110   000    Old_age   Always       -       33
196 Reallocated_Event_Count 0x0032   200   200   000    Old_age   Always       -       0
197 Current_Pending_Sector  0x0032   200   200   000    Old_age   Always       -       0
198 Offline_Uncorrectable   0x0030   100   253   000    Old_age   Offline      -       0
199 UDMA_CRC_Error_Count    0x0032   200   193   000    Old_age   Always       -       210
200 Multi_Zone_Error_Rate   0x0008   100   253   000    Old_age   Offline      -       0

SMART Error Log Version: 1
No Errors Logged

SMART Self-test log structure revision number 1
No self-tests have been logged.  [To run self-tests, use: smartctl -t]

SMART Selective self-test log data structure revision number 1
    1        0        0  Not_testing
    2        0        0  Not_testing
    3        0        0  Not_testing
    4        0        0  Not_testing
    5        0        0  Not_testing
Selective self-test flags (0x0):
  After scanning selected spans, do NOT read-scan remainder of disk.
If Selective self-test is pending on power-up, resume after 0 minute delay.

Just did some testing… It turns out that its the PCI SATA card I’m using.

As Kerwood pointed out it can also be the controller, I had the same error on my old laptop, luckily on the SATA port that connected the optical drive. Couldn’t fix it as it was embedded in the motherboard

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I left my local file server running for about a month, and did many things on it, including nixos-rebuild switch.

However, when I rebooted, I see those same errors and I could no longer boot it! The SATA connectors are soldered on the motherboard. I have tried different combinations in the BIOS/UEFI settings but it still won’t work.

Before any of these occurred, I ran smartctl on the drive a month earlier, and no errors were reported.

I don’t know where to go next from here.

What does “I could no longer boot it” mean?

  • Is the boot loader (grub or systemd-boot) starting?
  • Can you get a list of generations in the boot loader (for systemd-boot keep hitting space after BIOS/UEFI)?
  • Can you boot any older generation (try the previous one, if that doesn’t work, jump around a bit until you’re at the oldest one)?
  • Yes, Grub loads.
  • Yes, I can get a list of the older generations.
  • No, I can’t boot any of the older generations. I went back to as far as October 2018, but I still get the same message.

Here’s a photo of the screen where the error appears:

Did you try booting with another live distro and see what happens if you try to access the disk?